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| Packages that use SeisException | |
|---|---|
| org.javaseis.compress | |
| org.javaseis.examples | |
| org.javaseis.io | |
| org.javaseis.io.test | |
| org.javaseis.properties | |
| org.javaseis.tests | |
| Uses of SeisException in org.javaseis.compress |
|---|
| Methods in org.javaseis.compress that throw SeisException | |
|---|---|
static int |
TraceCompressor.getRecordLength(DataFormat traceFormat,
int numSamples)
Gets the record length in bytes. |
static void |
TraceCompressor.main(java.lang.String[] args)
The "main" method used for testing. |
static void |
SeisCompress.main(java.lang.String[] args)
Test harness for compression utilities |
| Uses of SeisException in org.javaseis.examples |
|---|
| Methods in org.javaseis.examples that throw SeisException | |
|---|---|
static void |
CreateRandomCDPs.main(java.lang.String[] args)
|
static void |
CalculateRMSValue.main(java.lang.String[] args)
|
| Uses of SeisException in org.javaseis.io |
|---|
| Methods in org.javaseis.io that throw SeisException | |
|---|---|
int |
ExtentManager.addExtent(long startPosition,
long extentSizeBytes)
Add an extent to a virtual file. |
void |
VirtualIO.allocateExtents()
|
protected void |
ExtentManager.allocateExtents()
Create all extents for a new virtual file based on extentPolicy |
void |
VirtualIO.close()
Closes a VFIO file. |
void |
Seisio.close()
Closes a JavaSeis file-structure. |
void |
ExtentManager.close()
Close this extent manager and release resources |
void |
Seisio.create()
Creates a JavaSeis file-structure (non-virtual). |
void |
Seisio.create(java.lang.String[] vfioDirs,
int vfioNumExtents,
boolean allocateExtents)
Creates a JavaSeis file-structure (virtual). |
void |
Seisio.create(java.lang.String[] vfioDirs,
long vfioExtentSize)
Creates a JavaSeis file-structure (virtual). |
void |
ExtentManager.create(java.lang.String virtualFileProperties,
java.lang.String[] extentDirectories)
Check extent directories for validity and create Virtual File Properties |
void |
SeisioVoxet.createDefaultVoxetHdr()
|
protected void |
Seisio.createHeaderPropertiesFile()
Creates a header properties file. |
void |
SeisioVoxet.createVoxetHdr(java.lang.String outputName,
float[] axis_o,
float[][] axis_uvw,
float[] axis_min,
float[] axis_max,
int[] axis_n,
float[] axis_d,
java.lang.String[] axis_name,
java.lang.String[] axis_unit)
|
long |
Seisio.findLogicalIndex(int axisIndex,
long logicalPosition)
Finds the index of a logical position, for the specified dimension. |
void |
VirtualIO.flush()
Flushes a VFIO data to disk. |
boolean |
Seisio.frameExists(int[] position)
|
protected double |
Seisio.getFilePropertyDouble(java.lang.String name)
Gets the double value of a file property. |
protected int |
Seisio.getFilePropertyDoubleArray(java.lang.String name,
double[] values,
java.lang.String sep)
Gets the double-array values of a file property. |
protected int |
Seisio.getFilePropertyInteger(java.lang.String name)
Gets the integer value of a file property. |
protected int |
Seisio.getFilePropertyIntegerArray(java.lang.String name,
int[] values,
java.lang.String sep)
Gets the integer-array values of a file property. |
protected long |
Seisio.getFilePropertyLong(java.lang.String name)
Gets the long value of a file property. |
protected int |
Seisio.getFilePropertyLongArray(java.lang.String name,
long[] values,
java.lang.String sep)
Gets the long-array values of a file property. |
protected java.lang.String |
Seisio.getFilePropertyString(java.lang.String name)
Gets the string value of a file property. |
protected java.lang.String[] |
Seisio.getFilePropertyStringArray(java.lang.String name,
java.lang.String sep)
Gets the string-array values of a file property. |
protected int |
Seisio.getFilePropertyStringArray(java.lang.String name,
java.lang.String[] values,
java.lang.String sep)
Gets the string-array values of a file property. |
static AxisLabel[] |
Seisio.getPreferredAxisLabels(DataType dataType)
|
static AxisLabel[] |
Seisio.getPreferredAxisLabels(java.lang.String dataTypeStr)
|
void |
Seisio.TraceMap.intializeTraceMapOnDisk()
Initialize the trace map on disk Sets all values in the map to zero |
boolean |
SeisNativeLock.lock()
|
boolean |
SeisLock.lock()
|
boolean |
ISeisLock.lock()
|
static void |
VirtualIO.main(java.lang.String[] args)
Simple test harness for VirtualIO class |
static void |
SortRead.main(java.lang.String[] args)
|
static void |
SortCreate.main(java.lang.String[] args)
|
static void |
SeisioVoxet.main(java.lang.String[] args)
|
static void |
ExtentManager.main(java.lang.String[] args)
Test harness for basic functionality. |
protected void |
Seisio.mapFlush()
Flushes the trace map buffer. |
void |
Seisio.mapFrame(int frameIndex,
int numTraces)
Adds a new frame to a mapped dataset. |
void |
Seisio.mapVolume(int[] position)
Preps a new volume for a mapped dataset. |
void |
SortRead.open(Seisio sioFile,
java.lang.String name)
Open a sort order for an existing JavaSeis dataset |
void |
SeisioVoxet.open(java.lang.String openMode)
Opens a JavaSeis file-structure. |
void |
Seisio.open(java.lang.String openMode)
Opens a JavaSeis file-structure. |
void |
VirtualIO.open(java.lang.String path,
java.lang.String openMode,
java.lang.String[] alternateDirectories)
Constructs (and opens) a VFIO file for subsequent I/O operations. |
protected void |
VirtualIO.openExtent(long newPosition)
Opens the extent that containts the specified position. |
protected void |
VirtualIO.openNonVirtual()
Opens a VFIO non-virtual file. |
protected void |
VirtualIO.openVirtual()
Opens a VFIO non-virtual file. |
protected void |
Seisio.parseFilePropertiesProMAX_C(java.util.Properties properties)
Parses the file properties for VERSION_C_PROMAX. |
int |
VirtualIO.read(java.nio.ByteBuffer buffer)
Reads from data channel to buffer. |
void |
Seisio.TraceMap.read(int volumeIndex)
Reads the trace map from disk. |
int |
VirtualIO.readBuffer(java.nio.ByteBuffer buffer)
Reads from data channel to buffer. |
int |
VirtualIO.readBuffer(java.nio.ByteBuffer buffer,
int len)
Reads from data channel to buffer. |
int |
SortRead.readFrame()
|
int |
Seisio.readFrame()
Reads into the the frame buffer from the currently-set position in the dataset. |
int |
Seisio.readFrame(int[] position)
Reads into the the frame buffer from the specified position in the dataset. |
int |
Seisio.readFrameHeaders()
Reads headers only for at the curent position in the dataset. |
void |
Seisio.readFrameScattered(int tracesInFrame,
long[] traceIndex)
Read a frame using a set of potentially scattered trace index locations. |
void |
Seisio.readMultiArray(MultiArray a,
int[] position)
Reads data from an open JavaSeis dataset into a MultiArray Shape must be greater than or equal to the JavaSeis dataset axis lengths for the subset that will be read. |
void |
Seisio.readTrace(long traceIndex)
Read a frame using a set of potentially scattered trace index locations. |
void |
SeisNativeLock.release()
|
void |
SeisLock.release()
|
void |
ISeisLock.release()
|
void |
ExtentManager.reload()
Reload properties from disk |
int |
SortRead.setFrame(int ifrm)
Set the current frame for subsequent read and write operations |
void |
SortRead.setPosition(int[] position)
Set the current position for a sort "scattered" read. |
int |
Seisio.setPosition(int[] position)
Sets the current position. |
long |
VirtualIO.setPosition(long newPosition)
Sets the position for subsequent VFIO operations. |
void |
Seisio.setTraceDataArray(float[][] trc)
Sets the frame trace data array used for read/write operations. |
void |
Seisio.setTraceHeaderArray(int[][] hdr)
Sets the frame header data array used for read/write operations. |
int |
SortRead.setVolume(int ivol)
Set the current volume for subsequent read and write operations |
void |
Seisio.TraceMap.setVolumeIndex(int volumeIndex)
Sets the volume index, flushing to current map buffer. |
(package private) void |
SortCreate.sortAllocateMaps()
Allocate memory and buffers for sort order maps |
(package private) void |
SortCreate.sortCreateMaps(int ntrc_est)
Create map files for a sort order |
(package private) void |
SortCreate.sortWrite()
Loop through sort list and write volume, frame, and trace maps |
void |
ExtentListEntry.toProperties(SeisProperties virtualProperties)
Convert this list entry to a set of properties |
int |
VirtualIO.write(java.nio.ByteBuffer buffer)
Writes from buffer to data channel. |
int |
VirtualIO.writeBuffer(java.nio.ByteBuffer buffer)
Writes from buffer to data channel. |
int |
Seisio.writeFrame()
Writes from the frame buffer to the currently-set position in the dataset. |
void |
Seisio.TraceMap.writeFrame()
Writes the trace map to disk for a single frame. |
int |
Seisio.writeFrame(int[] position)
Writes from the frame buffer to the specified position in the dataset. |
(package private) void |
SortCreate.writeFrameMap(int nfrm,
int ivol)
Write frame map for the current volume |
void |
Seisio.TraceMap.writeMap()
Writes the trace map to disk for the current volume. |
void |
Seisio.writeMultiArray(MultiArray a,
int[] position)
Write data from a MultiArray to an open JavaSeis dataset Shape must be conformable with the JavaSeis dataset axis lengths for the subset that will be written. |
void |
Seisio.writeTrace(long traceIndex)
Writes from the frame buffer to the currently-set position in the dataset. |
(package private) void |
SortCreate.writeTraceMap(int ntrc,
int ivol,
int ifrm)
Write trace map for the current frame |
(package private) void |
SortCreate.writeVolumeMap(int nvol,
int ivol)
Write volume map for a subrange of volumes |
| Constructors in org.javaseis.io that throw SeisException | |
|---|---|
ExtentListEntry(java.lang.String extName,
SeisProperties virtualProperties)
Construct an extent based on values in a VirtualFile Properties object |
|
ExtentManager(java.lang.String virtualFileProperties,
java.lang.String mode,
java.lang.String[] altDirectories)
Create an extent manager for an existing virtual file |
|
ExtentManager(java.lang.String virtualFileProperties,
java.lang.String extentBaseName,
java.lang.String[] extentDirectories,
long fileLength,
int numExtents)
Create an extent manager for a new virtual file |
|
ExtentManager(java.lang.String virtualFileProperties,
java.lang.String extentBaseName,
java.lang.String[] extentDirectories,
long fileLength,
int numExtents,
ExtentPolicy policy)
Create an extent manager for a new virtual file |
|
ExtentManager(java.lang.String virtualFileProperties,
java.lang.String extentBaseName,
java.lang.String[] extentDirectories,
long fileLength,
int numExtents,
ExtentPolicy policy,
IParallelContext pc)
Create an extent manager for a new virtual file in a parallel context |
|
Seisio(java.lang.String path,
GridDefinition gridDefinition)
Create a new JavaSeis dataset with a specified GridDefinition, default DataDefinition, and no trace properties. |
|
Seisio(java.lang.String path,
GridDefinition gridDefinition,
DataDefinition dataDefinition,
TraceProperties headerDefinition)
Constructs an instance of Seisio. |
|
Seisio(java.lang.String path,
int ndim,
int[] idim)
Constructs an instance of Seisio. |
|
Seisio(java.lang.String path,
int ndim,
int[] idim,
java.nio.ByteOrder byteOrder)
|
|
SeisioVoxet(Seisio sio)
|
|
SeisioVoxet(java.lang.String path)
|
|
SeisLock(java.lang.String path)
Create a lock manager for a particular file. |
|
SeisLock(java.lang.String path,
int retryCount)
Create a lock manager for a particular file. |
|
SeisLock(java.lang.String path,
int retryCount,
long maxsleep)
Create a lock manager for a particular file. |
|
SeisNativeLock(java.lang.String path)
Create a lock manager for a particular file. |
|
SeisNativeLock(java.lang.String path,
int retryCount)
Create a lock manager for a particular file. |
|
SeisNativeLock(java.lang.String path,
int retryCount,
long maxsleep)
Create a lock manager for a particular file. |
|
SortCreate(Seisio sioFile,
java.lang.String name,
java.lang.String sort3i,
java.lang.String sort4i,
Pacifier paci,
IParallelContext pci)
Create a new sort order for an open JavaSeis dataset |
|
SortRead(Seisio sioFile,
java.lang.String name)
Open a sort order for an existing JavaSeis dataset |
|
VirtualIO(java.lang.String path)
Open a VFIO non-virtual file for subsequent I/O operations. |
|
VirtualIO(java.lang.String path,
java.lang.String openMode)
Open a VFIO file for subsequent I/O operations. |
|
VirtualIO(java.lang.String path,
java.lang.String openMode,
java.lang.String[] alternateDirectories)
Open a VFIO file for subsequent I/O operations. |
|
VirtualIO(java.lang.String path,
java.lang.String extentBaseName,
java.lang.String[] extentDirs,
long fileSize,
int numExtents)
Create a VFIO virtual file for subsequent I/O operations. |
|
VirtualIO(java.lang.String path,
java.lang.String extentBaseName,
java.lang.String[] extentDirs,
long fileSize,
int numExtents,
ExtentPolicy policy,
IParallelContext pc)
Create a VFIO virtual file in a parallel context. |
|
| Uses of SeisException in org.javaseis.io.test |
|---|
| Methods in org.javaseis.io.test that throw SeisException | |
|---|---|
void |
JTestSeisLock.testSynchronous()
Lock and increment a counter in a properties file in a single thread. |
| Uses of SeisException in org.javaseis.properties |
|---|
| Methods in org.javaseis.properties that throw SeisException | |
|---|---|
void |
SeisProperties.close()
|
void |
SeisProperties.create(java.lang.String path,
java.lang.String header)
|
double |
SeisProperties.getDouble(java.lang.String key)
Get float property value from JavaSeis FileProperties object. |
int |
SeisProperties.getDoubleArray(java.lang.String key,
double[] values)
Get an array of doubles from the JavaSeis FileProperties object. |
float |
SeisProperties.getFloat(java.lang.String key)
Get float property value from JavaSeis FileProperties object. |
int |
SeisProperties.getFloatArray(java.lang.String key,
float[] values)
Get an array of floats from the JavaSeis FileProperties object. |
java.lang.String |
SeisProperties.getHeader()
Read the "header" line from the properties file |
int |
SeisProperties.getInt(java.lang.String key)
Get int property value from JavaSeis properties object. |
int |
SeisProperties.getIntArray(java.lang.String key,
int[] values)
Get an array of integers from the JavaSeis FileProperties object. |
long |
SeisProperties.getLong(java.lang.String key)
Get long property value from JavaSeis properties object. |
int |
SeisProperties.getLongArray(java.lang.String key,
long[] values)
Get an array of longs from the JavaSeis FileProperties object. |
java.lang.String |
SeisProperties.getString(java.lang.String key)
Get String property value from JavaSeis FileProperties object. |
void |
SeisProperties.load()
Load a JavaSeis properties object from the associated file |
void |
SeisProperties.lock()
Obtain a lock on the properties file |
static void |
TraceProperties.main(java.lang.String[] args)
The "main" method used for testing. |
static void |
SeisTraceProperties.main(java.lang.String[] args)
|
static java.util.Properties |
SeisProperties.mergeProperties(java.util.Properties oldProps,
java.util.Properties newProps,
boolean preserve)
Merges 2 sets of properties. |
void |
SeisProperties.open(java.lang.String path,
java.lang.String mode)
Open properties file |
void |
SeisProperties.open(java.lang.String path,
java.lang.String mode,
boolean fileLocking,
boolean nativeLocking)
Open a file for subsequent JavaSeis properties load/store operations |
void |
SeisTraceProperty.set(java.lang.String name,
java.lang.String s)
|
void |
PropertyDescription.set(java.lang.String label,
java.lang.String propertyString)
Sets the property label and description. |
void |
SeisProperties.store()
Store JavaSeis properties to the associated file |
void |
SeisProperties.unlock()
Release a lock on the properties file |
protected void |
SeisProperties.update(java.lang.String header)
Updates properties. |
void |
SeisProperties.useLock(boolean lock)
|
void |
SeisProperties.useNativeLock(boolean useNative)
|
| Constructors in org.javaseis.properties that throw SeisException | |
|---|---|
SeisProperties(java.lang.String path,
java.lang.String mode)
|
|
SeisProperties(java.lang.String path,
java.lang.String mode,
boolean useLocking,
boolean nativeLocking)
Create a file for subsequent JavaSeis properties load/store operations |
|
SeisTraceProperty(java.lang.String name,
java.lang.String s)
Construct a trace property description from a string |
|
| Uses of SeisException in org.javaseis.tests |
|---|
| Methods in org.javaseis.tests that throw SeisException | |
|---|---|
static java.lang.String |
TestUtil.getDatasetContainer()
Get a folder for storing javaseis datasets |
static java.lang.String |
TestUtil.getDatasetPath(java.lang.String name)
Using the name specified return a fully qualified path to a dataset. |
static java.lang.String |
TestUtil.getScratchFolder()
Get the scratch folder. |
static java.lang.String |
TestUtil.getScratchPath(java.lang.String path)
Using the name specified return the path and ensure the folder exists |
static java.lang.String |
TestUtil.getVirtualContainer()
Get the folder where unit tests results are stored, including log files, scratch files, datasets and virtual datasets |
static java.lang.String[] |
TestUtil.getVirtualFolders()
Returns an array of secondary folder locations. |
static java.lang.String[] |
TestUtil.getVirtualFolders(java.lang.String dsName)
Returns an array of fully qualified paths to secondary storage locations that will be made unique by appending the dsName parameter to the end of the path. |
static void |
ParallelVirtualIOTest.main(java.lang.String[] args)
Run simple parallel I/O test. |
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